Cifically, these mutants are C-terminally truncated at positions 305, 310, and 312 (called de305, de310, and de312, respectively from here on forth) and act as perturbations that destabilize the hinge helix of apoEPAC, mimicking the cAMP-induced unwinding (Fig. 1B). In order to explore how the mutations affect the inactive vs. active conformational equilibrium of apo-EPAC, we employed the previously proposed chemical shift projection analysis (CHESPA), which provides residue-specific fractional shift towards activation for each mutant (Fig. 2A) [27]. In addition, the allosteric role of the hinge helix was further probed by the chemical shift covariance analysis (CHESCA), for which mutations were utilized as source of perturbations, unlike in previous CHESCA applications where cAMP and analogs were used to perturb the allosteric system [26]. Our results confirm the hypothesis that the C-terminal residues of the hinge helix (i.e. residues 305?10) are a pivotal determinant of EPAC auto-inhibition, showing that the hinge helix is extensively coupled to the other conserved allosteric elements ofthe CBD, even in the absence of cAMP. These results also lead to the counter-intuitive prediction that order EXEL-2880 deletion of this C-terminal region causes an enhancement in cAMP-affinity, due to an increase in the apo/active relative population. This unexpected prediction was corroborated by the measurement of cAMPbinding isotherms through saturation transfer difference (STD) NMR experiments and the relevance of these results for the substrate-dependent sensitization to cAMP is also discussed [34,35].Materials and Methods Sample preparationThe deletion mutations de312, de310, and de305 were generated by inserting a stop codon at position 313, 311, and 306, respectively, by PCR in the Wt construct (EPAC1149?18) and confirmed by DNA sequencing. Wt and all mutant constructs including E308A were purified and labelled according to published methods [26].NMR MeasurementsSpectra were acquired with a Bruker Avance 700-MHz spectrometer equipped with a 5 mm TCI cryoprobe at 306 K. Gradient and sensitivity enhanced [1H-15N] heteronuclear singleAuto-Inhibitory Hinge Helixbetween the Wt(apo) and the Wt(holo) was calculated as the magnitude of the activation vector B in Fexaramine chemical information Figure 2A. The chemical shift (ppm) of the 15N was downscaled by a factor of 0.2, as indicated in Figure 2A. The cos H and fractional activation X were calculated as:I Icos HA .BDA DDB DI I??I IXA .B DB DI??Chemical Shift Covariance Analysis (CHESCA)The inter-residue correlation matrix was generated according to published protocols [26]. However, in contrast to previous applications of CHESCA, the perturbation set was composed of select mutations that destabilize the C-terminal end of the hinge helix. Such mutations were analyzed in the apo state, where the extended hinge helix is stable. Thus, the perturbation set used here for CHESCA consisted of: Wt(apo), de305(apo), de310(apo), de312(apo) and E308A(apo).Figure 2. Chemical shift projection analysis (CHESPA) using mutations as perturbations. a) Schematic of CHESPA. Open circles indicate HSQC peaks of the apo forms, whereas the filled circle represents the holo form (cAMP bound) HSQC peak. The green open circle represents the apo-mutant. The compounded chemical shift between the Wt(apo) and Wt(holo) was computed as the magnitude of the vector B, |B|. Similarly the compounded chemical shift between the Wt(apo) and Mutant(apo) was calculated as |A|. The magnit.Cifically, these mutants are C-terminally truncated at positions 305, 310, and 312 (called de305, de310, and de312, respectively from here on forth) and act as perturbations that destabilize the hinge helix of apoEPAC, mimicking the cAMP-induced unwinding (Fig. 1B). In order to explore how the mutations affect the inactive vs. active conformational equilibrium of apo-EPAC, we employed the previously proposed chemical shift projection analysis (CHESPA), which provides residue-specific fractional shift towards activation for each mutant (Fig. 2A) [27]. In addition, the allosteric role of the hinge helix was further probed by the chemical shift covariance analysis (CHESCA), for which mutations were utilized as source of perturbations, unlike in previous CHESCA applications where cAMP and analogs were used to perturb the allosteric system [26]. Our results confirm the hypothesis that the C-terminal residues of the hinge helix (i.e. residues 305?10) are a pivotal determinant of EPAC auto-inhibition, showing that the hinge helix is extensively coupled to the other conserved allosteric elements ofthe CBD, even in the absence of cAMP. These results also lead to the counter-intuitive prediction that deletion of this C-terminal region causes an enhancement in cAMP-affinity, due to an increase in the apo/active relative population. This unexpected prediction was corroborated by the measurement of cAMPbinding isotherms through saturation transfer difference (STD) NMR experiments and the relevance of these results for the substrate-dependent sensitization to cAMP is also discussed [34,35].Materials and Methods Sample preparationThe deletion mutations de312, de310, and de305 were generated by inserting a stop codon at position 313, 311, and 306, respectively, by PCR in the Wt construct (EPAC1149?18) and confirmed by DNA sequencing. Wt and all mutant constructs including E308A were purified and labelled according to published methods [26].NMR MeasurementsSpectra were acquired with a Bruker Avance 700-MHz spectrometer equipped with a 5 mm TCI cryoprobe at 306 K. Gradient and sensitivity enhanced [1H-15N] heteronuclear singleAuto-Inhibitory Hinge Helixbetween the Wt(apo) and the Wt(holo) was calculated as the magnitude of the activation vector B in Figure 2A. The chemical shift (ppm) of the 15N was downscaled by a factor of 0.2, as indicated in Figure 2A. The cos H and fractional activation X were calculated as:I Icos HA .BDA DDB DI I??I IXA .B DB DI??Chemical Shift Covariance Analysis (CHESCA)The inter-residue correlation matrix was generated according to published protocols [26]. However, in contrast to previous applications of CHESCA, the perturbation set was composed of select mutations that destabilize the C-terminal end of the hinge helix. Such mutations were analyzed in the apo state, where the extended hinge helix is stable. Thus, the perturbation set used here for CHESCA consisted of: Wt(apo), de305(apo), de310(apo), de312(apo) and E308A(apo).Figure 2. Chemical shift projection analysis (CHESPA) using mutations as perturbations. a) Schematic of CHESPA. Open circles indicate HSQC peaks of the apo forms, whereas the filled circle represents the holo form (cAMP bound) HSQC peak. The green open circle represents the apo-mutant. The compounded chemical shift between the Wt(apo) and Wt(holo) was computed as the magnitude of the vector B, |B|. Similarly the compounded chemical shift between the Wt(apo) and Mutant(apo) was calculated as |A|. The magnit.
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