Ified rat anti-human integrin a6 (MAB1378, Milipore) at a final dilution

Ified rat anti-human integrin a6 (MAB1378, Milipore) at a final dilution of 1:100 overnight at 4uC, washed three times with PBS followed by incubation forCell linesHuman colon cancer cell lines SW480, SW620, and HCT116 were all acquired from the American Tissue Type Collection (ATCC) [7,8,26]. Cells were grown in DMEM supplemented with 10 fetal purchase EED226 bovine serum, 50 U/mL penicillin, 50 mg/mL streptomycin on standard tissue culture plates (BD Biosciences) in a humidified incubator at 37uC and 5 CO2. Prior to analysis, cells were in log-phase growth and ,70 confluent. Detachment of cells from tissue culture plates was performed using TrypLE (Gibco) according to the manufacturer’s protocol (10 minutes atMultiplexed FACS Antibody Array in Colon CancerFigure 2. Oncomine analysis. Oncomine heatmap analysis in 4 published datasets for expression of tumor antigens described in Table 1. Only those genes that were consistently upregulated across datasets with p,0.05 are shown. The numbers in parentheses indicate the number of samples analyzed. Abbreviations: normal colon, NC; ascending colon, AC; descending colon, DC; sigmoid colon, SC; transverse colon, TC (n = 1). doi:10.1371/journal.pone.0053015.g1 hour at room temperature with goat anti-mouse IgG1 AlexaFluor 568 (1:1000 dilution) and goat anti-rat AlexaFluor 488 (1:1000 dilution), both from Invitrogen. Slides were washed three times with PBS and counterstained with nuclear stain Hoechst 33342 (1:10000) for 2 min. After washing with PBS, the slides were mounted with FluorSave (Calbiochem).Western blottingCells were lysed in 50 mM Tris pH 8.0, 120 mN NaCl, 0.5 NP-40, protease inhibitors (Sigma-Aldrich) and phosphatase inhibitors (Sigma-Aldrich). Equal amounts of cell lysate were loaded and resolved on a 4?2 bis-tris gradient gel (Life Technologies) and transferred to a PVDF membrane (Millipore). The membrane was simultaneously probed overnight at 4uC for anti-CD10 (mouse, 1:500, Abcam), and anti-b-actin (mouse, 1:8000, Sigma). Goat anti-mouse secondary antibody conjugated to horseradish peroxidase was detected using enhanced chemilluminescent substrate (1:3000, Santa Cruz).1:1000), and CD133-APC (Miltenyi AC133; 1:1000). Cells were prepared as described above. FITC-conjugated isotype controls (Santa Cruz) were used separately for each antibody to determine baseline staining and compensation was performed according to standard techniques. For multi-color analysis, a single cell line was labeled with all three antibodies in a single tube, washed, and loaded onto a FACS Aria II flow cytometer (BD Biosciences). Gatings and plots were constructed using FlowJo software package.Oncomine analysisBioinformatics Empagliflozin chemical information analyses were performed using the Oncomine database (www.oncomine.org). Genes of interest were evaluated based on a p-value cutoff of 0.05 and no expression level filter was used.DiscussionImproving outcomes for cancer patients will likely rely on new detection and treatment modalities for primary and metastatic disease. Here, we employed a novel high-throughput technique using a barcoded 11967625 antibody array to define the surface antigenStem cell marker analysisAdditional antibodies for multi-color flow cytometry CD44-PE (Miltenyi; 1:1000), EpCAM-FITC (BD Biosciences clone EBA-1;Multiplexed FACS Antibody Array in Colon CancerFigure 3. Validation of integrin a6 expression in colon cancer by immunohistochemistry. A) H E (top left) and integrin a6 IHC (top right) from clinical colon cancer specimens at l.Ified rat anti-human integrin a6 (MAB1378, Milipore) at a final dilution of 1:100 overnight at 4uC, washed three times with PBS followed by incubation forCell linesHuman colon cancer cell lines SW480, SW620, and HCT116 were all acquired from the American Tissue Type Collection (ATCC) [7,8,26]. Cells were grown in DMEM supplemented with 10 fetal bovine serum, 50 U/mL penicillin, 50 mg/mL streptomycin on standard tissue culture plates (BD Biosciences) in a humidified incubator at 37uC and 5 CO2. Prior to analysis, cells were in log-phase growth and ,70 confluent. Detachment of cells from tissue culture plates was performed using TrypLE (Gibco) according to the manufacturer’s protocol (10 minutes atMultiplexed FACS Antibody Array in Colon CancerFigure 2. Oncomine analysis. Oncomine heatmap analysis in 4 published datasets for expression of tumor antigens described in Table 1. Only those genes that were consistently upregulated across datasets with p,0.05 are shown. The numbers in parentheses indicate the number of samples analyzed. Abbreviations: normal colon, NC; ascending colon, AC; descending colon, DC; sigmoid colon, SC; transverse colon, TC (n = 1). doi:10.1371/journal.pone.0053015.g1 hour at room temperature with goat anti-mouse IgG1 AlexaFluor 568 (1:1000 dilution) and goat anti-rat AlexaFluor 488 (1:1000 dilution), both from Invitrogen. Slides were washed three times with PBS and counterstained with nuclear stain Hoechst 33342 (1:10000) for 2 min. After washing with PBS, the slides were mounted with FluorSave (Calbiochem).Western blottingCells were lysed in 50 mM Tris pH 8.0, 120 mN NaCl, 0.5 NP-40, protease inhibitors (Sigma-Aldrich) and phosphatase inhibitors (Sigma-Aldrich). Equal amounts of cell lysate were loaded and resolved on a 4?2 bis-tris gradient gel (Life Technologies) and transferred to a PVDF membrane (Millipore). The membrane was simultaneously probed overnight at 4uC for anti-CD10 (mouse, 1:500, Abcam), and anti-b-actin (mouse, 1:8000, Sigma). Goat anti-mouse secondary antibody conjugated to horseradish peroxidase was detected using enhanced chemilluminescent substrate (1:3000, Santa Cruz).1:1000), and CD133-APC (Miltenyi AC133; 1:1000). Cells were prepared as described above. FITC-conjugated isotype controls (Santa Cruz) were used separately for each antibody to determine baseline staining and compensation was performed according to standard techniques. For multi-color analysis, a single cell line was labeled with all three antibodies in a single tube, washed, and loaded onto a FACS Aria II flow cytometer (BD Biosciences). Gatings and plots were constructed using FlowJo software package.Oncomine analysisBioinformatics analyses were performed using the Oncomine database (www.oncomine.org). Genes of interest were evaluated based on a p-value cutoff of 0.05 and no expression level filter was used.DiscussionImproving outcomes for cancer patients will likely rely on new detection and treatment modalities for primary and metastatic disease. Here, we employed a novel high-throughput technique using a barcoded 11967625 antibody array to define the surface antigenStem cell marker analysisAdditional antibodies for multi-color flow cytometry CD44-PE (Miltenyi; 1:1000), EpCAM-FITC (BD Biosciences clone EBA-1;Multiplexed FACS Antibody Array in Colon CancerFigure 3. Validation of integrin a6 expression in colon cancer by immunohistochemistry. A) H E (top left) and integrin a6 IHC (top right) from clinical colon cancer specimens at l.